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GT21640

CSHL Arabidopsis genetrap mutant lines

Original: GT21640

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21640

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 16628339 [Map]; Strand: w
      • AT3G45300.1 - [+] show detail - isovaleryl-CoA-dehydrogenase
        Distance: -3291; Region: intergenic
      • AT3G45310.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 45; Region: intergenic
    Flanking Genome Sequence: GT21640 - 5-prime edge 
    AAGAGAAAAT ATTTTTAAGT AATTTCAAAT ACACATTACC TCATAACTAG 
    TTTCTATATG TATTTTGGAT CCATTTTTAG ATCATATAAA TTTCTTAAAA 
    AAAAATACTC CCAAGTCCCA AGTGATATAA ATCTATAACA ATTCAAGTAT 
    TCAACCATTC ATCCCAAATA ACCAAAAGCC TCAGTCCCTT GTAAGTTAAC 
    GGGCTTAAAC ATCAGTCTCA GGCAGTCAGG CCTCTTGACA TTATCTGGAA 
    ATAGTTTTCT TCTCTCTCGA CAATATAGAG TGTCACCCAT ATTATTTGAA 
    AACATACCCA TACAAGTATA AAAAACATTT ACTCCAAACT CCCAAGTGAT 
    ATAATTTCAC AACATTTCAC CTTTTCATCA CACGCAACCA AAACCCTCAC 
    TCCTTTGTAG GGTGTAAAGG GTTTTAAATC TCCCCCTCGG GCTACAACCG 
    GATACTATGA ATGTGTTGCC ACACCTGCCA AAATCAAAAG AAAAAATCTG 
    TGGGATAGAA AAAAACTAAC CGAACCACAC CATTTCTATT TTATTTCTTT 
    TATGCTAACT TAATGATCTA AC

AT3G45300.1

Model type
Protein coding
Short Description
isovaleryl-CoA-dehydrogenase
Curator Summary
Encodes isovaleryl-coenzyme a dehydrogenase. Mutants have increases in 12 seed free amino acids, accumulation of seed homomethionine and 3-isovaleroyloxypropyl-glucosinolate, with a concomitant decrease in seed 3-benzoyloxypropyl-glucosinolate.
Computational Description
isovaleryl-CoA-dehydrogenase (IVD); FUNCTIONS IN: isovaleryl-CoA dehydrogenase activity, ATP binding; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 4 (TAIR:AT3G51840.1); Has 45583 Blast hits to 45129 proteins in 2067 species: Archae - 559; Bacteria - 29477; Metazoa - 1687; Fungi - 835; Plants - 308; Viruses - 0; Other Eukaryotes - 12717 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G45310.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: aleurain-like protease (TAIR:AT5G60360.1); Has 7880 Blast hits to 7821 proteins in 741 species: Archae - 59; Bacteria - 266; Metazoa - 3310; Fungi - 4; Plants - 1865; Viruses - 146; Other Eukaryotes - 2230 (source: NCBI BLink).
Link
InterPro Scan - TAIR