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GT21644

CSHL Arabidopsis genetrap mutant lines

Original: GT21644

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21644

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17489014 [Map]; Strand: c
      • AT4G37120.1 - [+] show detail - Pre-mRNA splicing Prp18-interacting factor
        Distance: 0; Region: exon8 (CDS)
      • AT4G37130.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -453; Region: promoter
    Flanking Genome Sequence: GT21644 - 5-prime edge 
    CTCTCTTCAT TCTGTAAGCT TCCATCTCCT CGGAGGTCAC ATCGTTGGTG 
    TAATTGACAT TGTATTTGCG TTTCCTCTCA TCTTTTTCTT CCCTCCTACT 
    TAGATCCTCC TGCACACAAA CAACAACACG TCAGATAAAC CTTGCAGGGC 
    AGAGAAACAA GAGTCTTGGC AAGAGAAAAT ATGAACTGAA ACTGTGGCGT 
    CTTTCTTACC TTTTTAAGAG CATTTGCAAG TGCCTCCTCG TTCAATTCCA 
    AATCTTCAGG AATATCAGTT CCCCATGTCG CCATTTTCTT CTCTCTCGAC 
    CACTTCGGAC TCTCTGATCA CCAAAATACA AACCAATGTT ACAAAACATA 
    TTCCGAAATG TTACAATACA ATGAGAACAA ATAAGAGACT AGAAGAACAA 
    ACAGAGTCAA CAACACAAAC CTTTAGAAGC TTCTTTGCGA GCAATATTAG 
    CCTTCATCAG ATCAATGGAC GCCTCTGCAG CTTCAATTCC AGCAGAACCT 
    GTGCAATAGC TGTTGCGAAT TGTCTGCTGG CAACATTTAT ATCCCCATTG 
    GTGATCTTTC CACCATGATC CCCAAACACT TGTGTGATTG TTAGCATGAA 
    CATCTTCTTC ATATTTGCTC TTTGGAATTA TCACCTCCTG TACACAATAA 
    ACAACACGTA TTAAGCAAAC TTATCTCAAG CTGTTC

AT4G37120.1

Model type
Protein coding
Short Description
Pre-mRNA splicing Prp18-interacting factor
Curator Summary
Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size.
Computational Description
SWELLMAP 2 (SMP2); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37130.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 29299 Blast hits to 11722 proteins in 694 species: Archae - 13; Bacteria - 1010; Metazoa - 7996; Fungi - 3634; Plants - 2592; Viruses - 347; Other Eukaryotes - 13707 (source: NCBI BLink).
Link
InterPro Scan - TAIR