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GT21647

CSHL Arabidopsis genetrap mutant lines

Original: GT21647

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21647

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23259841 [Map]; Strand: c
      • AT3G62910.1 - [+] show detail - Peptide chain release factor 1
        Distance: 0; Region: exon4 (CDS)
      • AT3G62920.1 - [+] show detail - unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; ...
        Distance: -821; Region: promoter
    Flanking Genome Sequence: GT21647 - 5-prime edge 
    TCTTTTAGTG TTCAAAATTT GCAGCTTTTT TCGGGGTTTC TTAACATTGA 
    ATTCAATTTT AGGTTGTAAC AGTCTTCAGA AGATTCAAGG ACTGTGAGAA 
    GCAGTTACTA GAAAGCAAAG GTCCCTTCAA GTCTCCTCCT TTCTTTTACT 
    TTGCTTTGAT TCTGTTCCTC GGAAGCTGGT TATGATTTAC TGATTGGTTT 
    ATTGCTTCAG TTTTGGCGAA AGAGGCTGGA GATGATGAAG ATATGGCTGA 
    AATGATAGGA AGTGAAATCA ACTCGCTCAC TAAAGAAATT GAGGAGCTTG 
    AAAAACAACT TAAGGTTTAG AGCCTTGGTT CCATAGCTGA CTTATTCGGC 
    AGCTGAAAAT CGAATGTTGC TCATTTTAAA AATTTGATTC TGATACTCAA 
    CTCGTAACAT TGTGTTGGCT TGTGTCAGGT GTTACTTCAT CTCTCTCGA

AT3G62910.1

Model type
Protein coding
Short Description
Peptide chain release factor 1
Curator Summary
Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.
Computational Description
ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT2G47020.1); Has 17224 Blast hits to 17222 proteins in 2820 species: Archae - 0; Bacteria - 10525; Metazoa - 262; Fungi - 197; Plants - 224; Viruses - 13; Other Eukaryotes - 6003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62920.1

Model type
Protein coding
Computational Description
unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR