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GT21648

CSHL Arabidopsis genetrap mutant lines

Original: GT21648

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21648

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23458060 [Map]; Strand: c
      • AT3G63530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron2 (5UTR)
      • AT3G63530.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: GT21648 - 5-prime edge 
    CCTGTATGCC TCTCCTTCCC TGCGCTTTCA ATTCTTTGTA TGCTTAGTCT 
    GTCTCTTTGT TCATTCACAT CTGACCCTAA TCCACTTTCT TGCATATATA 
    CCTACTACTG CTTTCGGGAC TTGTCTTGTT TATGCAAATC TAGAAATAGT 
    TTTGTTCCTT TCTTTTCCCC TGGATAAATT TTCTAGTTGC TAGGTTCATT 
    CGTATTTTGG AAGGTATTTC ATCTCTCTCA ACTAGCTCTC AACACTGTCC 
    CCTCCAATGG CTAATCCTTT TATTTTTTTC TTAATTCCAA TTCCCTTAAA 
    TACATCTCAC AGTCTTCTTC TTCTTCCTCC AACA

AT3G63530.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 8059 Blast hits to 8045 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 2322; Fungi - 418; Plants - 4266; Viruses - 8; Other Eukaryotes - 1045 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63530.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR