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GT21651

CSHL Arabidopsis genetrap mutant lines

Original: GT21651

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21651

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 231553 [Map]; Strand: c
      • AT4G00520.2 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: exon17 (3UTR)
      • AT4G00520.3 - [+] show detail - Acyl-CoA thioesterase family protein
        Distance: 0; Region: exon17 (3UTR)
      • AT4G00525.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -227; Region: promoter
    Flanking Genome Sequence: GT21651 - 5-prime edge 
    TTTTAGAGGG GAGATAATAA TTTGTGGATC GAAAAACATA TGCAAATGTA 
    GTATAAGTGA CGACTCTTTG GAATGTGACC GTGAGGAGTA ACAGATGCAG 
    CAATTCTCTC ACTATCAAAA TCCTATGGCT TCATATCTTG CCACCAAAGG 
    ATGGCTTAAT AGTCACAGCT TCTCTTAACA CAGCTTCTTG CGTCAATGAT 
    ACCACCAGCT GCGCATAAAT GATCAAACTA TATATTTACG TTTGAAAAGA 
    ATAAGAGCTC GATTTTTGCA AACTATATTA GATTCTTCAT TCTTCTTCAA 
    TGCTACAACG TACCTCTCCC TTTCTGTTGA ACATTTTGCC AGTTGCAAAA 
    CCGCGGCTTT CGGTTGCGGT TGGACTCACT ATCTGCACAA GGGAAATGTT 
    GTTAGTATAT TGATCTTGTT CAGAGTTT

AT4G00520.2

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00520.3

Model type
Protein coding
Short Description
Acyl-CoA thioesterase family protein
Computational Description
Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00525.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR