1. Home
  2. Mutant Lines
  3. GT21668

GT21668

CSHL Arabidopsis genetrap mutant lines

Original: GT21668

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21668

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3040991 [Map]; Strand: c
      • AT5G09790.1 - [+] show detail - ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
        Distance: 0; Region: exon1 (5UTR)
      • AT5G09790.2 - [+] show detail - ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
        Distance: -21; Region: promoter
    Flanking Genome Sequence: GT21668 - 5-prime edge 
    TTCGTGGCGC ACACGCGGCG GTGCACATTA GCCCCAACCA ATCAAAATCA 
    TATATCCCGT TCTCCGGCGA CTCTTCGTCG TGAGCTTCCG TCATGGCCAC 
    ATGGAACGCA TCCTCCCCTG CGGCGTCTCC TTGCTCATCG AGGCGACGAA 
    CGAAAGCTCC AGCGAGACGC CCTTCCTCCG AATCTCCACC ACCGAGGAAG 
    ATGAAATCAA TGGCTGAGAT AATGGCGAAA TCTGTCCCTG TGGTTGAACA 
    AGAAGAAGAA GAAGACGAAG ACAGCTACAG TAACGTCACC TGCGAGAAAT 
    GTGGTTCTGG AGAAGGAGAC GATGAGCT

AT5G09790.1

Model type
Protein coding
Short Description
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
Curator Summary
Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
Computational Description
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (TAIR:AT5G24330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09790.2

Model type
Protein coding
Short Description
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5
Curator Summary
Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
Computational Description
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (ATXR5); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (TAIR:AT5G24330.1); Has 4395 Blast hits to 4055 proteins in 218 species: Archae - 0; Bacteria - 10; Metazoa - 2832; Fungi - 365; Plants - 935; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).
Link
InterPro Scan - TAIR