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GT21669

CSHL Arabidopsis genetrap mutant lines

Original: GT21669

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21669

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21415924 [Map]; Strand: w
      • AT3G57810.2 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G57810.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G57810.3 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -159; Region: promoter
    Flanking Genome Sequence: GT21669 - 5-prime edge 
    TCGGCTTTGT TTTGTTCAAT TCTCACCTCA CCCCGGACAG AGTCCAAAAC 
    AACGGTTTAT TTCTTGCGTT TGTCGGGAAA TCAGAGTTGA GTATAATAAA 
    CACCCTTCAC GACATTCTTT GCTTGTCCAC CTTGGTAATC CTCCATTCAC 
    TCTCTTCACG TGTTTCTCTC TTGATAATTC TCTGATACCC GTACGCAATT 
    TTATCTTTCC TTCTTCATCT CTCTCGA

AT3G57810.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 631 Blast hits to 631 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57810.2

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57810.3

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 624 Blast hits to 624 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 265; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR