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GT21699

CSHL Arabidopsis genetrap mutant lines

Original: GT21699

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21699

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20487361 [Map]; Strand: c
      • AT1G54940.1 - [+] show detail - plant glycogenin-like starch initiation protein 4
        Distance: 2820; Region: intergenic
      • AT1G54950.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 3167; Region: intergenic
    Flanking Genome Sequence: GT21699 - 5-prime edge 
    ACAAATGAGA TCTCTCCAAG TTACCTTATA TATGTCTATG AATTAGGATT 
    CTTTTATATG TCTTCGCAAC TGAGAAGTGT CTCAAAAGTT GTCAAGAAGC 
    TATCTCTCTC CCTAGCCCCG TATTTGGAAA AGGTCCAACC TGAATTCTCG 
    CAATCACTGA GTGACGTACA TTGTTTACAC CTATGGCATA ACTTATGGGA 
    ATATTCCTCT TCATCTCACT CGA

AT1G54940.1

Model type
Protein coding
Short Description
plant glycogenin-like starch initiation protein 4
Computational Description
plant glycogenin-like starch initiation protein 4 (PGSIP4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 1335 Blast hits to 1329 proteins in 289 species: Archae - 0; Bacteria - 103; Metazoa - 257; Fungi - 309; Plants - 506; Viruses - 75; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54950.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07690.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR