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GT21727

CSHL Arabidopsis genetrap mutant lines

Original: GT21727

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21727

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3393300 [Map]; Strand: w
      • AT3G10840.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -10; Region: promoter
      • AT3G10845.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -709; Region: promoter
    Flanking Genome Sequence: GT21727 - 5-prime edge
    ACCCTGCTCT CCCTCCCACA CTGTATCTAT CTTCGCTTTC TTCAAATTCA 
    TCTCACTCGA CCATACTAAT CAGACAGAAG AATAACATCA ACTACACAAA
    AGTTCTGACA TTTTTGTTCT GTTTTTTCTA AATTAAACGG CAAGGTTAGA
    TGATTCAACA GTGTTTTGTC TTTGTTTGTA AAACAAATTA AAAAAAAAAT
    GGGGATGAAT TCCTGACTTC TCATTCTCAG TTCTCACCTA CACAATCTAT
    TGGACAAAAA CTAAAGATCA TTGGATGAAC AAAAGGACCT AAACGTAAAA
    AGCCCACTCC ATTCGTTGCC ACTTGGCTTC TCAGAATTAT GGGCCGCCAA
    AATTAAACTA TTCCAAGTTT TGGTATTACA ATTTGAAAGT TTTATTTTTT
    TTACTGCTTA TTACCAAACC GGTTCACAGT TTCCCACATA AAATCACCTT
    GACTGGTTCA AAAACCTTTT ACAGGATCCC TTAACACACC ACCCCCCCAC
    CCACACCCCC TCTTTCCCCC AAATTTAATT TAAATTTTGT TTGGTTGGGA
    AAAAAACCCC GGGACTCCCC CAACCCAAAT TTTTT

AT3G10840.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G15490.1); Has 7044 Blast hits to 6961 proteins in 1208 species: Archae - 69; Bacteria - 5119; Metazoa - 311; Fungi - 102; Plants - 308; Viruses - 4; Other Eukaryotes - 1131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10845.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G45100.1); Has 2317 Blast hits to 1788 proteins in 256 species: Archae - 0; Bacteria - 24; Metazoa - 947; Fungi - 528; Plants - 665; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
Link
InterPro Scan - TAIR