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GT21738

CSHL Arabidopsis genetrap mutant lines

Original: GT21738

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21738

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16522686 [Map]; Strand: c
      • AT4G34588.1 - [+] show detail - conserved peptide upstream open reading frame 2
        Distance: 0; Region: exon1 (3UTR)
      • AT4G34590.1 - [+] show detail - G-box binding factor 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21738 - 5-prime edge 
    GTTGAGAGAT TGGAGCCTGT GGTTAAGTTC ATCAAGCTGA GCTCTGAGAA 
    CAGAGTTCTC TGCTTCAACG GTTAGGTAGT GTTGCGTTGT GATGCTGACA 
    CTTGTCACGA TCTCCGTGTT CTCTTTTTTC AGATGATTAA CCTGAGCCGT 
    TAGATCGTCT AGGAGCTTTT GTTTCTTCAT TCTTCATCTC ACTCGA

AT4G34588.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 2
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF2 represents a conserved upstream opening reading frame relative to major ORF AT4G34590.1
Computational Description
conserved peptide upstream open reading frame 2 (CPuORF2); LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 5 (TAIR:AT1G75388.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34590.1

Model type
Protein coding
Short Description
G-box binding factor 6
Curator Summary
Encodes a basic domain leucine zipper (bZip) transcription factor bZIP11. Translation is repressed by sucrose. Directly regulates gene expression of ASN1 and ProDH2, which are enzyme-coding genes involved in amino acid metabolism.
Computational Description
G-box binding factor 6 (GBF6); FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: sucrose induced translational repression, negative regulation of translation, regulation of transcription, DNA-dependent, response to sucrose stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 44 (TAIR:AT1G75390.1); Has 1778 Blast hits to 1778 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 2; Plants - 1730; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR