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GT21766

CSHL Arabidopsis genetrap mutant lines

Original: GT21766

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21766

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15944123 [Map]; Strand: w
      • AT4G33040.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -2793; Region: intergenic
      • AT4G33050.3 - [+] show detail - calmodulin-binding family protein
        Distance: 199; Region: intergenic
    Flanking Genome Sequence: GT21766 - 5-prime edge 
    ACACGCTAAA ACCCCAAACA ATGATCATGA TTCAAAAGAA AGATATAAGG 
    TATATACTCT GCATCAGTTT GAAATGTAAA TAAAATTATC ATAATGTTAT 
    AAGAAACAAG AAAAATAAAA GAAGAGAAGA TGATCTAGAC TACTAATTTA 
    AGTGTATCGA AAGAGAAGAG AGACTGGAAG TAAGGAGCAA GGACCCAAGT 
    TTGGAAGTAA GGCTCTGGCA AAAGTTTGAT GGTCAGCGAG AAGCAAAGTC 
    TTAGTACGAG GATCTTATTT GAGTAACCTT TCTTTCAAAT CCCAGTGATT 
    TGAATTATTT GGCCTCTTAC CTTTAATTTT AAATATAGAT AGACGTCTTA 
    TTGGTTAATA AGACTTAGCA TAATCAAGTC ATATCTAACA AGAGAATTTA 
    TCAAAAGAAA AATTCAAAAC AACAAAATGT TGCAAATTCG AGAAATATAC 
    AAAAGGAATT AAAGTAGAAA GAGAAATGGA GGTTAGTTTC TCTTCTCTTC 
    TTATAACCTC ACTCTTTCTT GGATAACAAG TTTAAAAAAT GTGTTTTAAA 
    TTTTAACACT TTACAGCCCT AGGGCTTGGG ATTCCCATGT ATGCCAAGCG 
    TGGAGACACC CTCACTTTAG GACTAGGCCT TGGAGATGGA ATTGGTCCGT 
    AAGAATTAGC TGGTGAAACC CTAGGAGACA GACTGACTTG CTCCAGTGCT 
    TGTGCTTGTA GCTCCATTGG ATAATCTCTA ACACACCCAA TTCTTGGACC 
    ATATCCACTT GTCCATTTAC AAGACAGTCT CTTTACAGGA TCAAACACTG 
    GTCTCGCTCT CTCTTCTTTC TCTG

AT4G33040.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Computational Description
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT5G11930.1); Has 1149 Blast hits to 1147 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 257; Fungi - 124; Plants - 712; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33050.3

Model type
Protein coding
Short Description
calmodulin-binding family protein
Computational Description
embryo sac development arrest 39 (EDA39); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT2G26190.1); Has 379 Blast hits to 276 proteins in 60 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 104; Plants - 246; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR