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GT21785

CSHL Arabidopsis genetrap mutant lines

Original: GT21785

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21785

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25218474 [Map]; Strand: c
      • AT1G67330.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 3300; Region: intergenic
      • AT1G67340.1 - [+] show detail - HCP-like superfamily protein with MYND-type zinc finger
        Distance: -11791; Region: intergenic
    Flanking Genome Sequence: GT21785 - 5-prime edge 
    GCTAGTAATA CTTTAGGACT GATACTTTCC ATACCGGTAC TTTGCGGGTA 
    CATCCTTACC CGGACTAAAA TTTCATGAGA CAACACACTG AATTGATACT 
    TTTGGCTACT TTTAGCGTAG ACACTCGAGA TGTTGGCTGG CACGTTTAAG 
    GCCGCTTTTC CAGTTTTGCT ATCTTACTTT CATCTCACTC GAC

AT1G67330.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Computational Description
Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67340.1

Model type
Protein coding
Short Description
HCP-like superfamily protein with MYND-type zinc finger
Computational Description
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR