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GT21804

CSHL Arabidopsis genetrap mutant lines

Original: GT21804

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21804

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 871309 [Map]; Strand: w
      • AT1G03475.1 - [+] show detail - Coproporphyrinogen III oxidase
        Distance: -98; Region: promoter
      • AT1G03490.1 - [+] show detail - NAC domain containing protein 6
        Distance: -565; Region: promoter
    Flanking Genome Sequence: GT21804 - 5-prime edge 
    TAAGAAGTCT CTCGTCGTCC ACTGATTTTG ACCGCTCTTC CTTTTTATTT 
    AACAGCTCAA GGTAAAAGAA AAACACAGTT CCAGTCTTCT CAGACTAAAC 
    CACTTCTGAA TTATTTAGCC GAAACCAAAC CAGACACGAA ATTAAAATTG 
    CGGTTTAATT TGGTCGAACC GAAGATATTG ATACACAATA GGCTCTTATC 
    CTTCTTAACG GGCTTAATTG CCCAAATTAG GCCCAAAACG ATTAGCCGGT 
    TTACGGCACT ATGCTATTTT GATGTGGATA AATCATGGTC ATGTAATATA 
    TCTTTATCTA TCGTTAGAAT CTGTGATAAA CAAAACAAAA GTGTATTATA 
    GATTCGAATC CTATCTAATT ATTATTTCAA ATAACCAAAT AGATGTAATT 
    ACAACCGTCT TATTCTTTCC AAAAAATAGT TAATCGCTGA CAAAAGAAAA 
    TCCGGTTGGG CCCATCACGT TGTCTATATA TTCATGATCA TATACAGAGT 
    TCAGCCGCTT GACCTGCGAG GAATTCAAGA AAACCCTGCT TCACAGAGCA 
    GTATTACACA AGAGACGAAA GAGCACTTTT AACCTTAGCA ATTATATAGG 
    TACCTTAGCT AGTTCTTCTT CGAATCTATA CGATCGATAT GAAGATTCTT 
    CCGGTTGGAT CACGGTTTTG TCCGACGGAT CTA

AT1G03475.1

Model type
Protein coding
Short Description
Coproporphyrinogen III oxidase
Curator Summary
Encodes coproporphyrinogen III oxidase, a key enzyme in the biosynthetic pathway of chlorophyll and heme, a tetrapyrrole pathway. Mutants express cytological and molecular markers associated with the defense responses, usually activated by pathogen infection.
Computational Description
LESION INITIATION 2 (LIN2); FUNCTIONS IN: coproporphyrinogen oxidase activity; INVOLVED IN: tetrapyrrole biosynthetic process; LOCATED IN: apoplast, chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coproporphyrinogen III oxidase (InterPro:IPR001260), Coproporphyrinogen III oxidase, conserved site (InterPro:IPR018375); BEST Arabidopsis thaliana protein match is: Coproporphyrinogen III oxidase (TAIR:AT4G03205.1); Has 4884 Blast hits to 4875 proteins in 1228 species: Archae - 0; Bacteria - 2144; Metazoa - 115; Fungi - 160; Plants - 86; Viruses - 0; Other Eukaryotes - 2379 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G03490.1

Model type
Protein coding
Short Description
NAC domain containing protein 6
Computational Description
NAC domain containing protein 6 (NAC006); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: TCV-interacting protein (TAIR:AT5G24590.2); Has 1772 Blast hits to 1529 proteins in 129 species: Archae - 0; Bacteria - 33; Metazoa - 146; Fungi - 22; Plants - 1047; Viruses - 89; Other Eukaryotes - 435 (source: NCBI BLink).
Link
InterPro Scan - TAIR