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GT21812

CSHL Arabidopsis genetrap mutant lines

Original: GT21812

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21812

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 153373 [Map]; Strand: w
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT21812 - 5-prime edge 
    GCGAGATGTT TCTTTCAGTG TTAGGGTGTC GAATGAGCTA GGATCGGGAC 
    ATCCACGAGC TGCGAAATAC TCGGTGATCG TAACGGTGAT AGAGTCTCTC 
    GTCATTGGAG TAGTGTGTGC AATTGTAATT CTCATAACAA GAGATGACTT 
    TGCTGTGGTT TTTACGGAGA GTGAAGAGAT GAGAAAGGCG GTAGCTGATC 
    TTGCGTACCT GCTCGGTATA ACGATGATTC TCAACAGTTT ACAACCAGTT 
    ATATCAGGAG TTGCAGTAGG AGGAGGATGG CAAGCACCGG TGGCTTATAT 
    AAACTTGTTT TGTTACTACG CTTTTGGATT ACCTCTAGGG TTTTTGTTAG 
    GTTATAAAAC AAGCCTTGGC GTAAAGGTAA AGCCACATAG CTTCCGGTCT 
    AATTATTTTG GTTTAAGTTG ATGAAATTGC TTTATGTGGT TTTTCAGGGG 
    ATATGGATTG GTATGATATG TGGGACTAGT CTTCAGACTC TCATACTTTT 
    GTACATGATC TACATAACCA ATTGGAACAA AGAGGTACCC CCACTCATTT 
    CAGGTTTTAT AATCAAATCT TTCACACAAA TTGAAGTAAA ATGATTCACT 
    ATCTTAATTT ATTAGGTGGA ACAAGCTTCG GAGAGAATGA AACAATGGGG 
    AGCTGGATAT GAGAAATTAG AAAAAATAGC AACTTGAATG ATTTTGGGGA 
    AAAAAATTAT ATATACACTT CACTTTATCT TATGTTATAC AGCAATATAT 
    TTTTCATTGT ATATATCAAT TTTTTTTGTA ATACCAAATT GTATATATCA 
    TCAAAAATAT AATTTATCAT ACATTTGTAA ATTTTTAATC TTATCAAAAT 
    GATGATTTAA ATCT

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR