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GT21814

CSHL Arabidopsis genetrap mutant lines

Original: GT21814

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21814

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 44478 [Map]; Strand: w
      • AT4G00120.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1281; Region: intergenic
      • AT4G00124.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 797; Region: intergenic
    Flanking Genome Sequence: GT21814 - 5-prime edge 
    ATTATATAGC TCATGTTTAA ATTCTGGAAT TGTTTTCATA ACTAAATTTT 
    TTTCGATAAA GTTGTCATTT TAAAATATTT CCTAGAGTTC TAATTAAGTT 
    TAGTGTTGTG TGAATGGAAG AATTCGACAC ATAACTTGCC AAAAATCCGT 
    GCATGTGATT AATTTGGCAA AGGAAATTAA AGAAAATATC ATTAGATCAT 
    GATTAAAGCT AAGTTTTGCA GCAAAATTAT ATATATTGCC GTTTAAAGAC 
    TCAATATATT TCTACCTTTT TCGCTAACAA ATTTCATGGA CTCATTTGTG 
    CTAGTTTATA TAAACCTTGT TATAACCATT TAAATTCGTA TACGTACGTA 
    CGGAGCAATA CAAGAAACAC ATATAAAGCA AAATCCTATA GACCACAAAA 
    GATAGAAGAA ATAGTGTGTG GTCAAAATCA TGGTTACTCA AAAAGCAAGA 
    TCAAGAACAA GGGATTAAAT TTCTAGGGTT TTTCCTAAGG ACGAAGAAGG 
    AGAGAGACTT TACGAAATTA GGGCAAAAAA GGAGCGTTGC ACTTTGGTTT 
    GGATATCATT GCCATAAGGA AGCATAAGTC GCTCTTGTAA TAGTTACTCA 
    ACACATGTCT CCATTTTTAG TGCTCATTAT TTTGACCTAA TTTTCTTCTC 
    TCTCTCCTCT TTTGACAACT CCTATACACC AAAATAGGCA ATTTAACATC 
    ATTGTTCTTC TATTTCTTGT CTTTCTTCTA AACCCCACGG TTTCTTCGAC 
    ATTTTCTTAC AAGCCCTTTC AACGGCCTTG ATTTGATCTT AGCTAGGAAA 
    T

AT4G00120.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00124.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR