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GT21872

CSHL Arabidopsis genetrap mutant lines

Original: GT21872

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21872

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22414679 [Map]; Strand: c
      • AT5G55250.2 - [+] show detail - IAA carboxylmethyltransferase 1
        Distance: -3998; Region: intergenic
      • AT5G55260.1 - [+] show detail - protein phosphatase X 2
        Distance: -1920; Region: intergenic
    Flanking Genome Sequence: GT21872 - 5-prime edge
    CTATATTATG TGACAAGACT CAAAAACTAT ATTAATAAAA CAGACTTCCT 
    GGTCTTCTGG TTATTAATCC AATTTGCTTT CCACGTTAGG GACATTATAA
    ATTACACATT ATATATAAGA ATATTACCAT GAAAATAGAA GGAAAAAAAT
    CTGAGAAGCA ACTTAGTAAG AAACAAACCT TTTTTTTTGT CCAAACAAAC
    AAATGCAATT TTTGAACATT TTAAATGATT TATGAACATT TTGTTTGACT
    TTTGCGTGAC AAGTTGTTTT TCATATATCA GGTTATATTT CTAAGTAAAG
    TTTTTCTATT TTTTAAATTA AATTTTAAAA ATCTAAATCT GTATATGTTT
    TATACGGGCC AACAAAAAGT ATAAGTATTT CAGTTAGTAG TTGGGGCAAA
    ATTAGGTATA CACGAAAAAC CATGGTTTCA TCTGAGATTA TTAAATCATA
    TATATCAACG ATAACTAACG GTAAAAATCG TTACACGAGT ATACCTAATC
    TAGCTAGGTT GAGTTTATAT TTAACTTTAA TTCATTGGTC TATGCATTTA
    AGTATCTAAA TAAAAAAATC ATCTTAGTCT CATCCTTGTC TCCGAAGTCC
    AAATAATCTC ATTTT

AT5G55250.2

Model type
Protein coding
Short Description
IAA carboxylmethyltransferase 1
Curator Summary
Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.
Computational Description
IAA carboxylmethyltransferase 1 (IAMT1); CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: gibberellic acid methyltransferase 2 (TAIR:AT5G56300.1); Has 921 Blast hits to 905 proteins in 124 species: Archae - 0; Bacteria - 69; Metazoa - 9; Fungi - 5; Plants - 719; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55260.1

Model type
Protein coding
Short Description
protein phosphatase X 2
Curator Summary
Encodes a protein with similarity to the catalytic subunit of the mammalian PPX protein phospatase.
Computational Description
protein phosphatase X 2 (PPX2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase X 1 (TAIR:AT4G26720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR