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GT21877

CSHL Arabidopsis genetrap mutant lines

Original: GT21877

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21877

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8087478 [Map]; Strand: w
      • AT5G23955.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT21877 - 5-prime edge 
    GAGTTTTAGC AGTGACGGAT GATGCTGGAA CATATATAGA GGAGATGATG 
    AAATTGGTGA AGCTGCAGAA GAGTACTTTA CAAATCTGTT CAAGTCCACA 
    AGAGATGAAT TTAGAGATAA CACAAGCGTC TTCCAAGGTC TACAGGGGAA 
    AGTGACAAAT CAAATGAATA TGGACCTCCA AAGAATGGTG AATGAAGAAG 
    AAATTCAAAA GGCTGTGTTT GATATTGGGC CGGATAGAGC GCCTGGACCA 
    GATGGAATCA CTGCAGCATT TTACCAACAA TTTTGGCCAG ATGTGAAAGA 
    TGCAGTCATT GTTGAAATCC AACGTTTTTT CCGAGAGGGT AACATGCGCG 
    AATCAATGAA CCACACCAAC ATCTGCCTCA TTCCAAAGAA AGATGTCTCT 
    TCATCGATAG TAAACATTAG GCCAATTGCT TTATGCAATG TGAGCTACAA 
    AATAATCTCC AAAATCCTTG TCGAACGCTT GAAACACCAC CTGCCATCTA 
    TAATTTCAGA AAATCAAGCA GCTTTTATAG GAGGGAGGAA CATTATGGAC 
    AATGTCATCA TTGCAAATGA GATGCTTCAC TCACTGAAAA AAGGAAACGT 
    TGGGCTAATT CCTATATGAC GGTTAAGACG GACATCACAA AGGCTTATGA 
    CAGATTGGAG TGGGCCTTTC TACGAGAAAC AATGCAGAAT ATGGGGTTTG 
    ACTCGATTTG GATAAATTGA GTAATGCAAT GTGTGGAATC AGTCAGCTTC 
    TCAGTTCTAG TGAATGGTTC TCCTAGAGGA ATGATAAAGC CAGAGCGAGG 
    AATCCGCCAA GGTGATCCGT TAT

AT5G23955.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.6e-41 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR