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GT21888

CSHL Arabidopsis genetrap mutant lines

Original: GT21888

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21888

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16526910 [Map]; Strand: c
      • AT4G34590.1 - [+] show detail - G-box binding factor 6
        Distance: 3680; Region: intergenic
      • AT4G34600.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: polle...
        Distance: -2315; Region: intergenic
    Flanking Genome Sequence: GT21888 - 5-prime edge 
    CAAGATGGAT AAAATGTGAA AGGCCTGCAA TTGTTTCATT TTATCGTCAG 
    ACATGGATAC TCTCTCAGCA TCCGTTTCAT CCTTGAACCT CCCTTCTCTT 
    CCTCCACCAC CGCAGCCACC GTTGAGATCC ATCTCCAGCC GCTTTAAATC 
    CACCGTAAAC GCCACCACTT CTGCTTCATC TCACTCGACA ACATTTTCTC 
    TTAGTTGGTC AGTGCCCAAA AACAAAATTA AAGAAAAAAT TGAATAATGA 
    AAGATTAGAA TTTTGACCAA AAAAAGAAGA AAAAACTAAT GCTAAAGAAT 
    TTCTTGACCG CAATTGCGTT AAAAAAAATA CAATTATCTT CATAAATTTT 
    GAACATATAT ATCTCAATGG ACATGAAATG AGAACCATAC TATAGAAAAA 
    GAAAATCTAC AAACTTGAGA ATATTAAAGG CATATACATG TATACAGAAT 
    ACTAGACACA TTTGTACTAT AAATTGACTA TAAACATTCT CTTTCACGAT 
    TATTAAAATT TACTTGAAGG AATAAAGCAT ACGTCGAATA TATATGCAGT 
    TTAAAAGTAG TGGTATTCAT CTCACTCGA

AT4G34590.1

Model type
Protein coding
Short Description
G-box binding factor 6
Curator Summary
Encodes a basic domain leucine zipper (bZip) transcription factor bZIP11. Translation is repressed by sucrose. Directly regulates gene expression of ASN1 and ProDH2, which are enzyme-coding genes involved in amino acid metabolism.
Computational Description
G-box binding factor 6 (GBF6); FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: sucrose induced translational repression, negative regulation of translation, regulation of transcription, DNA-dependent, response to sucrose stimulus; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 44 (TAIR:AT1G75390.1); Has 1778 Blast hits to 1778 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 2; Plants - 1730; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34600.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16385.1); Has 17 Blast hits to 17 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR