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GT21889

CSHL Arabidopsis genetrap mutant lines

Original: GT21889

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21889

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17343620 [Map]; Strand: w
      • AT4G36800.1 - [+] show detail - RUB1 conjugating enzyme 1
        Distance: -861; Region: promoter
      • AT4G36800.2 - [+] show detail - RUB1 conjugating enzyme 1
        Distance: -885; Region: promoter
      • AT4G36808.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G36810.1 - [+] show detail - geranylgeranyl pyrophosphate synthase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT21889 - 5-prime edge 
    CACCACCACA ATCATCATCA TCCATCTTCA ATCCTTACCA AATCCAGATC 
    CAGATCTTGT CCTATAACTC TTACTAAACC CATCTCCTTT CGATCAAAAC 
    GCACCGTTTC ATCATCTTCT TCAATCGTTT CTTCTTCCGT TGTTACAAAA 
    GAAGACAATC TACGCCAATC TGAACCATCC TCTTTCGATT TCATGTCGCA 
    CAACAACACC AAAGCCGAAT TAGTCAACAA AGCTTTAGAT TCAGCTGTTC 
    CTCTCCGTGA ACCACTCAAG ATCCACGAAG CGATGCGTTA CTCTCTTCTC 
    GCCGGTGGCA AAAGAGTTAG ACCAGTTCTC TGCATCGCTG CTTGTGAACT 
    CGTCGGAGGT GAAGAATCAA CCGCTATGCC AGCAGCTTGC GCCGTCGAGA 
    TGATTCACAC CATGTCGTTG ATCCACGACG ATCTCCCTTG TATGGATAAC 
    GACGATCTCC GCCGTGGAAA ACCGACCAAC CACAAAGTGT TTGGTGAAGA 
    CGTCGCTGTT TTAGCCGGAG ACGCGCTTCT CTCTTTCGCT TTCGAGCATT 
    TAGCTTCGGC GACGAGTTCT GATGTTGTTT CTCCGGTGAG AGTGGTTCGA 
    GCCGTTGGAG AATTGGCTAA GGCGATAGGA ACAGAAAGGT TAGTGGCGGG 
    TCAA

AT4G36800.1

Model type
Protein coding
Short Description
RUB1 conjugating enzyme 1
Curator Summary
RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
Computational Description
RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36800.2

Model type
Protein coding
Short Description
RUB1 conjugating enzyme 1
Curator Summary
RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
Computational Description
RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36808.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G36810
Link
InterPro Scan - TAIR

AT4G36810.1

Model type
Protein coding
Short Description
geranylgeranyl pyrophosphate synthase 1
Curator Summary
Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.
Computational Description
geranylgeranyl pyrophosphate synthase 1 (GGPS1); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT2G18620.1); Has 16617 Blast hits to 16612 proteins in 2936 species: Archae - 341; Bacteria - 9385; Metazoa - 291; Fungi - 423; Plants - 452; Viruses - 12; Other Eukaryotes - 5713 (source: NCBI BLink).
Link
InterPro Scan - TAIR