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GT21948

CSHL Arabidopsis genetrap mutant lines

Original: GT21948

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT21948

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 350764 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 585; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 2693; Region: intergenic
    Flanking Genome Sequence: GT21948 - 5-prime edge 
    TTATGACTTG GATATGCTGA AATCAAACCT ATGGTAAACA GGCTTCATCA 
    TGTATGATGT CAGTATATAA AATTCATGAA ATCAATTGGT GTAGTTGGTA 
    TTGGTTCAAT TGGTGTAGGT GAGCTCCTGG GTGCTATGGC AAGGTTTCCT 
    GAATGTTGAA TAGAGGCGAT ACATAGATCT AAGTGTTTTT TTTTGCGTTA 
    GTTTTCGGAG AAGCCTTAAA CTTCTATCTT TGAGGTTTTG TGGACGGGGC 
    TCAAATAGTT AGCTTCGTGG CAACAACGAT GAGGATTCCA AGTTTCGGTT 
    TTGTGGCAAT CACACAAATG TCTGGGTTTC ACGAACTCGG AATCGGTGTT 
    TCACTTCGCG ACTTGACCAT TTTTCACTAT GTTTCGATCC GAATCTATTT 
    GAGTAGTAAT GTTGTCTTAA ATTTTCTGTA GTGCTTTTAT CCGTTTCTAC 
    TTTTCTTTGT AACTTCTGTC ACAAATCAAA AATGGTATAA AATTTCACTT 
    TTTACCAAAA ATAAATAAAA ATTCATGAAA TCAAAATAAG AAAACTAGTA 
    AGATTGATTT ATATATACTG AAAAAAATCA AGAAAAAATA ATTTTAAGAA 
    AGATCAAGTA TATATGAACA TATATACACA TATTTGCTCC TTCGACGATG 
    ATGTTTTTTT TTCAAAATGT AATTTAAATA AAGATTTGTT TTCAATGTTT 
    GGAGCATAAT AATTGAAGAA AAATGTGCGG ATTGTATTTA CTTAAACATA 
    TATTTATGCA AATAAAATTT TATGCCAAAA AAGTCTTATT TATAAAA

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01818.1

Model type
Protein coding
Short Description
PLATZ transcription factor family protein
Computational Description
PLATZ transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT3G60670.1); Has 397 Blast hits to 397 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR