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GT22046

CSHL Arabidopsis genetrap mutant lines

Original: GT22046

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22046

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14780727 [Map]; Strand: c
      • AT4G30190.2 - [+] show detail - H(+)-ATPase 2
        Distance: -4669; Region: intergenic
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 5906; Region: intergenic
    Flanking Genome Sequence: GT22046 - 5-prime edge 
    CATCAAAATC CATAAACTAG CGTAAAGTCA ACTTAAGTTC ATGTCGATAT 
    AATTTCATCT CTCTCCACCA TTACAAAAGT CAAAATGCTA ATTTTGTGGT 
    CAAACCATTA ATGATTTTTA ACCTCATTAT CGTAAAAAAT AATTGAAGAT 
    CTCATTATTG AGGATGTTTT GTTATATTCA GAACATGGTC GGTGATGCTA 
    GACTTGCTAC TAGTAGTTGG TTAAAAAAAA TAAAGATACT TCACATACCA 
    TTACTAAGAA AAAAACCAGT TCACTTAGTT GATTAGTCAT TAATATATAA 
    TCTTAGGTGG TGAAATTAGA ATATTCGGTT TTAGATATAA AACAATTGGT 
    GATAAAATCT TATATTTTTT TCTTCAGTGA AATCATTTAT TTCCACCGAT 
    CGAGCGAGCA ACAAAGAGCT AAGACCAAAA AGGTTGGTTC AAGTGGATGG 
    ATTCACACAT TACAAGATTC AATGGATTTA GGATTTTATC TGAAACAGAG 
    AAGCAGTAGC AGTAGCAATT ATTTTGTGTA AGTAGACAAG TACACGTGGC 
    TACGAATGAT TGGAAGTAAT TTTATGTAAA AGTGACAGAT CCTTAAATAA 
    AAAACCATTC AGATTCTCTT TTTCTTCGTA ACAGGTAACG GCCCCGTTAG 
    ATTAGGTGAA GTCTCCTTGC CACCACCACT TCTTCTTCTC AT

AT4G30190.2

Model type
Protein coding
Short Description
H(+)-ATPase 2
Curator Summary
belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom
Computational Description
H(+)-ATPase 2 (HA2); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 1 (TAIR:AT2G18960.1).
Link
InterPro Scan - TAIR

AT4G30200.1

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR