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GT22060

CSHL Arabidopsis genetrap mutant lines

Original: GT22060

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22060

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11445093 [Map]; Strand: w
      • AT1G31880.1 - [+] show detail - DZC (Disease resistance/zinc finger/chromosome condensation-like region) doma...
        Distance: -397; Region: promoter
    Flanking Genome Sequence: GT22060 - 5-prime edge
    TCGATGCTTC TTTACTCATT TAGTAGAAAC ATAACAACAA AAAATTGGCA 
    CACATGATCA TAACCAAAAC AAGACAAAAC GATGAAACAC ACATATATTA
    TGTATAGTAA AATAAAATAA AAAGAGATGA TGAAATGAAC CCACACAAAG
    CGAATCGTGA TGCGACGGTT CCCTTGGCCT GTCAAATGTA TCGTGACCAA
    AACCCGACCC GGTTTCAGCT GTCTCAAACC AATCAGAAAC CGCCACGTAT
    TCTACTTCCA CCACACGTAA GCCATCTCCG TCACCGGTAG ACAACATGGG
    CCCTCTTTGC CGTCTCTTCT CGAGACCAAT ATTTTTCCTC GGCACACCAA
    AATAATAAAC CTCCGTCAAA ACTCACGGTT CTTTTTTATT ACATTAAACG
    CCGTTAAACA TTCTCTTTCC TCCACGTATA TATATATACT CTTCGTAACT
    CTTGTCTCTC TTCTCTTCGT CTAGTTAAAA CTCTCGGAGC TCCTTTCAGT
    TCTCGGGTCA CCCAATAACC CGACTTCTCG ACCCGGTTTC GTCTCTGTCC
    ACCATTTTTC CAAATTTCTC TTCCGGAAAA TGAAGATTTC TATGGGTTTT
    TGAGTTTGGA GATTTTCTCA GTGAAGTTTA TTACATAATC AGATTCGAAG
    AAGAAGACAT TTCAGGTGAG TTTATAAAAA TTCTCTTTTT TGAAGATTTT
    TCTCGGGAAA ATAAGAAAAC AGAGAGATTC GTTGCTCTGT TTCTGTTCTT
    CTGT

AT1G31880.1

Model type
Protein coding
Short Description
DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
Curator Summary
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.
Computational Description
BREVIS RADIX (BRX); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 1 (TAIR:AT2G35600.1); Has 707 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR