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GT22078

CSHL Arabidopsis genetrap mutant lines

Original: GT22078

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22078

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5712447 [Map]; Strand: w
      • AT5G17330.1 - [+] show detail - glutamate decarboxylase
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT22078 - 5-prime edge 
    CTGCCTACAG TACTAATATG CGAATTGATA GCTAGATACT TTTAACTAAT 
    GATACATTTT TATTGGGCCA TAACGGAAAT AAAAGGAAGA CAATATCGAA 
    ATATCGGTTA TGGTTTGAAA TTATTAGATT TCTCGTGTTT TAAATTAAAA 
    ACTTAAAAAA TGACCTAATT TTCTAGCATA TTTTTTTTTT TTCCCAACAA 
    AAATTGGACC GAAATTTTTT ACCCCAAAAC CAAAAAATTG AACCCGGGTG 
    GGATTAAAAA AAAAATTTTT TTAAAAATTT TAAAAAAAAA GAATTTTTCC 
    CCCCAAATAA GGGGGGGCTT AAACCTAATT TTTGTTTTCC TCCCCCCC

AT5G17330.1

Model type
Protein coding
Short Description
glutamate decarboxylase
Curator Summary
Encodes one of two isoforms of glutamate decarboxylase.
Computational Description
glutamate decarboxylase (GAD); FUNCTIONS IN: calmodulin binding, glutamate decarboxylase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR