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GT22092

CSHL Arabidopsis genetrap mutant lines

Original: GT22092

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22092

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16565481 [Map]; Strand: w
      • AT4G34710.2 - [+] show detail - arginine decarboxylase 2
        Distance: -2550; Region: intergenic
      • AT4G34720.1 - [+] show detail - ATPase, F0/V0 complex, subunit C protein
        Distance: 2343; Region: intergenic
    Flanking Genome Sequence: GT22092 - 5-prime edge 
    CGTCTCCAAC GTTATATATT TGCTTATCAT AAGCATACAT CTGTCCTCTT 
    TTCGTCATGT TCTAATCATT ATATTTGATG CAGTAATCAA ACAATTTTAC 
    CATGTCAACC AAACAACATT TTCCGTTGAT TGTTTGCTTA GTGTAATTGT 
    GTAAATTATG GTTATCATTT AGCTTTATAA AAATATATAT GACTATGGTT 
    AAGTGTAACT TTTATGTGTA TAGATGATGA GATATTTCAA GCAAATAGTT 
    GTGAAAAGAA TGGAATAATG AAGAAAAAGA AAGATAACTA GGATCTTGCG 
    ATAAAAAGGC AAAAACATTC TATCAACATG CTAGCTATAT CACCAATTTC 
    CTTTACTTTT GAGATATTTG ATCACTTGAT CCTACTATAA TTTATGAGAT 
    TTTATTTTAA TTCAAATTGA TAAATTGTGT AGTTTTTCAC ACACAAAAAA 
    ATAAAAAATA ATTGTGTAGT TCTTAATTGA TACGAGTT

AT4G34710.2

Model type
Protein coding
Short Description
arginine decarboxylase 2
Curator Summary
encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1.
Computational Description
arginine decarboxylase 2 (ADC2); CONTAINS InterPro DOMAIN/s: Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Arginine decarboxylase (InterPro:IPR002985), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644); BEST Arabidopsis thaliana protein match is: arginine decarboxylase 1 (TAIR:AT2G16500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34720.1

Model type
Protein coding
Short Description
ATPase, F0/V0 complex, subunit C protein
Curator Summary
vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1)
Computational Description
AVA-P1; FUNCTIONS IN: ATPase activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR