1. Home
  2. Mutant Lines
  3. GT22131

GT22131

CSHL Arabidopsis genetrap mutant lines

Original: GT22131

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22131

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10334874 [Map]; Strand: w
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -303; Region: promoter
    2. Chromosome: 5; Position: 10374611 [Map]; Strand: c
      • AT5G28450.1 - [+] show detail - Chlorophyll A-B binding family protein
        Distance: -421; Region: promoter
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -288; Region: promoter
    Flanking Genome Sequence: GT22131 - 5-prime edge 
    AAGTGTTTGG ATACTTCTTC CTTATACTCC AAGAGGGCTT TGTTGATCAC 
    TTCTCCTACT TTACCTTTGG AACAGCAATT CTGAGCTCAG CCTCTCGCCA 
    TTTCATCTCA CTCGA

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28450.1

Model type
Protein coding
Short Description
Chlorophyll A-B binding family protein
Computational Description
Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 1998 Blast hits to 1946 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR