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GT22162

CSHL Arabidopsis genetrap mutant lines

Original: GT22162

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22162

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1550877 [Map]; Strand: w
      • AT3G05400.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT3G05400.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT22162 - 5-prime edge 
    TCGCCTTCGG GCATAAAATG GTAAGAATCA ATTATTCTCA AAATCACCCC 
    TATATTTCTT TTATTTTGTC GGAAGCCCAA AAATTTATAT GGTAAATTTC 
    TACGCCCTCA TTTTTTTTAG GATTACAAAA TTTGTTACAG GTTGTGGTGG 
    GATGATTTAT TCTGGCATAG ACTGGGTGGT GGGGAGTTTG AGTAGCCAAG 
    GTTCCCTCCG TAACTTATAT TCTTCTTTAT TTTTGCAAGT TTAACAAAAT 
    TGTATATTTT ATCACCTTTT TAGAAATATA GTCTATGTTT TTTTGTAGTA 
    TATAATTCTT ATTTTAAATT TCTTTTTTGG CACACAGGAT ATTATTTGGC 
    TTGACATGGG GCGATTTTTG GTGGGAATTG GAGTTGGTCT CATTAGCTAC 
    GTGGTAAAGC TATTTCCTGA AAAAATGATA AAAAAATAAT AATATATATC 
    GCCGTAACCA TAAATATTTT CTGTATAGGT TCCTGTATAT ATTGCAAAAA 
    TAACACCCAA GCACGTAAAA GGGGCTTTTA CATTTACCAA TCAGGTAACT 
    TACCTATTTA AAATCGAAGT TTAAACGTAT ATTATCATTT TATACATAAA 
    TTTGACTTAT TTATTCTAAC ATCAATACTT CACAGCTTTT GCAAAACTGG 
    GAAGTTGCAG CCGAATATTA CTTT

AT3G05400.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1); Has 24275 Blast hits to 23828 proteins in 1815 species: Archae - 445; Bacteria - 9241; Metazoa - 4940; Fungi - 6177; Plants - 2315; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05400.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1).
Link
InterPro Scan - TAIR