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GT22188

CSHL Arabidopsis genetrap mutant lines

Original: GT22188

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22188

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4024602 [Map]; Strand: c
      • AT5G12410.1 - [+] show detail - THUMP domain-containing protein
        Distance: -614; Region: promoter
      • AT5G12420.1 - [+] show detail - O-acyltransferase (WSD1-like) family protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT22188 - 5-prime edge 
    GGCGTATGAT CCTACCGTCA TATCAGACCC TCACAAGATT TGTGATGATA 
    TGGAAGAATC ACTGAAAGCA ATGAAAGCTT CTCTCTGTGA AAGAGGTTTA 
    CTCTAAGGCG CATGAACCAT ATTAACTGTA ATCCTTAAGA CTGTGTATAT 
    GTTTTTGTTT GGTATAAAAT GTTGTGTTTT AGCAGTTTTC AATGCTTTTG 
    TATTATCTAT AATGTATTGG AGTGCAGAAC ATATGTAATA TCATTCTCGT 
    CCACTGTGTT GGAAATTAGT AGGTACGTAT TGTCAAATAT TTTAGAATAT 
    TAAGAGATCT CATTTTTCGT AGTCCTAATT AATAAGAAAG CGTCATTAAA 
    TGATGTGACT TGTGAATTTT GTTTCTTTGA TCAGCAACCC CACCTGTTAT 
    AACTTAAATT TACAATGAAA CATTGAAAAT TCTTAGGTGA TCACTAAAGT 
    AAAGGTGCAT ATATAACCAC CGATATCGCC CAACCAATTT TCCAACGATA 
    CAAATATAAC CAACACTTCT CTCAGGTTTC GATCAACATG CAATTAAGAA 
    TTAACAAAAA TGTGAAAGAT ATAGTATCAG GCTTATCACA AAGGTAACGA 
    GGGGTTTAGC TAATGGGTCA AGACCAAGCC CAATAGGCCC ATTCACGCAT 
    GACCTAACTA ATTCTCCTCG TCACTGTGTT TGGCTCAACT CC

AT5G12410.1

Model type
Protein coding
Short Description
THUMP domain-containing protein
Computational Description
THUMP domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THUMP (InterPro:IPR004114); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12420.1

Model type
Protein coding
Short Description
O-acyltransferase (WSD1-like) family protein
Computational Description
O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT5G16350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR