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GT22208

CSHL Arabidopsis genetrap mutant lines

Original: GT22208

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22208

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30045649 [Map]; Strand: w
      • AT1G79870.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G79870.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT22208 - 5-prime edge 
    TTCATCCCTG GCTCTAAACA TTGGGCCGTG GACCACATGT GTGATGAGCA 
    AGAGCTTATT AAAGCTCTAA CAGAAGGCCG CCTAGGTGGG GCTGCCCTTG 
    ATGTGTTTGA GCAGGAGCCT CACGTGCCCG AGGAGCTCTT TGGCCTTGAG 
    AATGTGGTTC TCCTCCCTCA CGTTGGGAGT GGCACTGTGG AAACACGGAA 
    TGCCATGGCC GATCTTGTCG TGGGTAACTT GGAAGCGCAC TTTTCTGGGA 
    AATCACTTCT GACTCCGGTC GTCTGAGTCA TGTGACACAT TTGGGATTTG 
    GTTTCACTTC ATTTGAAAGG TTTTTATGTT AACGAACTCA TGAAAAGGGT 
    AATTTCTCTT CCAAAAGAAA GTTGCACTGT CGTATATAAG GAACAGATTT 
    GAACACTAGG CGAATCCTCT CCGTTTTATG TCTCTTACTT ATCTTTCTTC 
    CCTCTC

AT1G79870.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79870.2

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1).
Link
InterPro Scan - TAIR