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GT22219

CSHL Arabidopsis genetrap mutant lines

Original: GT22219

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22219

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12620052 [Map]; Strand: c
      • AT5G33382.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT22219 - 5-prime edge 
    GTTCAATATG TAAGTGACAA GACACAAGCC CAGTCAGCCC AATCACAAGC 
    CCAACAAAAC AATGTCCAAG TCAAGAGTTC CTCTCAACAT CACGGTCAGA 
    CAAAACAGAG TTTGCAGAAT TTGCAGAAGA AGCAGAGTCA ACCAGCTGAC 
    TCTCCGACCA TCGTACTATG TAACCGTTTC AGTCCTATCA CATCAGAAGA 
    AGAGAGTGGC TAGATGATTG ACAAGTGTAA CCAGATCCTT GACTGCAAAT 
    AAGGATCCAG AAGGTTCTTT TTGTAGTATA AGTATAAGCT CTTTGTATTC 
    ATCGTGGGTT TGGGAGAGTG TTAATGAAAA GTATTATTCA GTAAGAAAAC 
    CCTCTTCTTC TTTTATTCAC ATGGTATCAG AGCCTCTAAA ACCCTAACCG 
    GTGCTGTCAT GGCTGAGACT TCTGGACCTT ACCCCTTTCC TTCCACTCTT 
    CACGTCGCTA GCTCCGTCAC AATCAAGCTA AGCGACAGTA ACTATCTTCT 
    CTGGAAAACC CAGTTTGAGT CACTTCTTCG ATGTCAAAAG CTTCTCGGTT 
    TTGTTAATGG TTCAGTCCCT AAACCACCGA CGGTTCTTGT TACCACTGTC 
    AACAATCTCG CCGTCGAAAC TCCAAACCCG GAGTATGAAG CTTGGATCTG 
    TACGGACGAG CTCATCAAAT CTTGGATCTT TGGTACTCTC ACTGAAGAAG 
    TGCTCGGTCT T

AT5G33382.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.3e-126 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata)
Link
InterPro Scan - TAIR