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GT22249

CSHL Arabidopsis genetrap mutant lines

Original: GT22249

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22249

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1177799 [Map]; Strand: c
      • AT2G03860.1 - [+] show detail - transposable element gene
        Distance: 162; Region: intergenic
      • AT2G03870.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -2185; Region: intergenic
    Flanking Genome Sequence: GT22249 - 5-prime edge 
    CCGGAGAGAT CAAGCTAGAG AAGGGAACAG AGGAGAGCTA AAACTCATAT 
    CTAACAGAAT CTTTATTATC ATGTAAATGT TTTTACAAAA TCTTAATCTA 
    AATAAAGTGT ACTTAAGCTT ATATATACAT CACTAATAAC CATACTAAAC 
    CAACCATCAG ATAACTGATG TTAACCTGTC GCACCATATA TCATAATACG 
    CCCCTCTCAA ACCTTTATGT TCTAAGTGTC TGGTTTATGA AGATAAAGAT 
    TTGAAATTGA CATCTTCTGA AGTAAATGAT GGAATGGACC GGGATGTAAT 
    GGTTTTGTCA AAATATCAGC ATGTTGATTC TCAGTCGGAA CATGTAGAGT 
    AGTGAGATGA CCAGCCTTGA TTTGGTCACG AATTGTATGG CAATCTATCT 
    CTATGTGTTT AGTCCTCTCA TGAAATACCG GGTTCATAGC AATGTGGATA 
    GCTGATTTGT TGTCGCAGAA GAGTTTTGCC GGACAAGTAA CTTTGATGTG 
    TAAGTCTTAT AGCAGCTGTT GTAGCCAAAT AATCTCACAA GTGCCCTGAG 
    CAAGACTTCT ATATTCACAC TTTGTACTAC TCCGACTAGC TACTG

AT2G03860.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.0e-62 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT2G03870.2

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: probable small nuclear ribonucleoprotein G (TAIR:AT2G23930.1); Has 1450 Blast hits to 1450 proteins in 289 species: Archae - 222; Bacteria - 0; Metazoa - 489; Fungi - 323; Plants - 216; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).
Link
InterPro Scan - TAIR