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GT22257

CSHL Arabidopsis genetrap mutant lines

Original: GT22257

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22257

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17027318 [Map]; Strand: c
      • AT4G35950.1 - [+] show detail - RAC-like 6
        Distance: -1455; Region: intergenic
      • AT4G35970.1 - [+] show detail - ascorbate peroxidase 5
        Distance: -1288; Region: intergenic
    Flanking Genome Sequence: GT22257 - 5-prime edge 
    GCTCATTAAG CTTCACTACA ACCAACACAA AGAAAGAAAA ACTATCATCG 
    TAATCAAGAA CCAGAGGCGG ATTCAGACTT GAGACTCTGC TTTAGGGTTT 
    GGTAAGAATC TGATGTTTCT CCTTTTCGTT TGACGAATTG AGCCATGTAT 
    TTTCTGAAAC ATCTTGATTT TGGGAATTGT AGTCATAATG AGAAAGAGAG 
    TTATTATAGT TTCCTGTCGT TTTGGTGTAA TTTATCTTTG AGAAATTTCT 
    GACATCTAAA ATGTTTCTGA CAATTACAGG AGATAGAGAG AGAGAAAAGA 
    TAAAAGATCC ATCATAGTCA CGACAAACGA TCGACGGCAA CCTTTGGCGG 
    AGATAGCGGG CTTGTTGCGC CGGAGTATCA TCTTGCACTT CCAGTTGACT 
    ACTCGCCGTG ATGTTCAGGG TAATGTTTCA TCACTGCTCT TCATCT

AT4G35950.1

Model type
Protein coding
Short Description
RAC-like 6
Curator Summary
A member of ROP GTPases gene family-like. GTP binding protein Arac6.
Computational Description
RAC-like 6 (RAC6); FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: Arabidopsis RAC-like 1 (TAIR:AT2G17800.2); Has 24191 Blast hits to 24163 proteins in 668 species: Archae - 9; Bacteria - 59; Metazoa - 12632; Fungi - 3489; Plants - 2692; Viruses - 20; Other Eukaryotes - 5290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35970.1

Model type
Protein coding
Short Description
ascorbate peroxidase 5
Curator Summary
Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 5 (APX5); FUNCTIONS IN: L-ascorbate peroxidase activity, peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 3 (TAIR:AT4G35000.1); Has 11368 Blast hits to 9243 proteins in 1286 species: Archae - 103; Bacteria - 4136; Metazoa - 9; Fungi - 795; Plants - 3885; Viruses - 0; Other Eukaryotes - 2440 (source: NCBI BLink).
Link
InterPro Scan - TAIR