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GT22351

CSHL Arabidopsis genetrap mutant lines

Original: GT22351

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22351

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13852902 [Map]; Strand: w
      • AT1G36630.1 - [+] show detail - transposable element gene
        Distance: -5277; Region: intergenic
      • AT1G36640.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 269; Region: intergenic
    Flanking Genome Sequence: GT22351 - 5-prime edge 
    GCTGAAAATA CAGCCACGAG ACGCTCAAGA TCATCAAAGA TGAACTTTTA 
    AAACTCGCGA GTGTCTTGTT TCTGTGTTTG TTATTTCTAT TGGAGTGGTC 
    GTGGAGTGTC AAGTGGTATA GGCATCACAC ATTTGAACAA GTGGTATTAA 
    GCGTTAGTTA TTGCTATCAA ATATCAATCA TGAAAAGAGA AAGAAGATTA 
    TGAAATCGAT CAAAATTTAA TCTAACAGGA GAGAATAGGT CGAAAGGTTC 
    AGCTTGAAGC GTAAGATACA TATCTTAATA TGTCATTGAC TTTCCCAAAT 
    TAGATCAAGT TGACACAATT TTTTTTTTTT TTTTTTTTTT AGGGGGGGTT 
    TGTTTTAAAA TTTTTTTTAA AAAAAGGACC CCCCCCAAAA TTTTGCCCGG 
    GGGCCCCGTT TTTTTCCCCC TTTAAAAGGT TTTACCCCCA AATTTTTTTA 
    AAATTTTTTC CCCCAAAAAA AAAAAAAATT TTTATTTAAC TTTTTTAAAA 
    AAAAAAAAAA AAACCTTTTT TAATTTTGAA AAAAAAAACC CAAACCCAAA 
    AAACCCCCTT AAAAAAAAAT TTAAAAAAAC TTGGGTTTGG TTTTAAATTT 
    TTAAACCACC CCAACCCCCA ATTTTTTCCA AAAAAAATTT TTTTT

AT1G36630.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Tnp1/En/Spm), has a 2.5e-213 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)
Link
InterPro Scan - TAIR

AT1G36640.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36622.1); Has 14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR