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GT22380

CSHL Arabidopsis genetrap mutant lines

Original: GT22380

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22380

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20415959 [Map]; Strand: c
      • AT3G55080.1 - [+] show detail - SET domain-containing protein
        Distance: -62; Region: promoter
      • AT3G55080.2 - [+] show detail - SET domain-containing protein
        Distance: -25; Region: promoter
    Flanking Genome Sequence: GT22380 - 5-prime edge 
    TCAAAAAGTC AAAATTTGGA AGGCTATCTA CAAAATCAAT TAAAAACAAA 
    CCGATTTATC TGAAATTTAA AACCGAAACA AACCGCATCA GAATATCGTC 
    TGGTCCTGGC CGCTCTGCTC TAGCCGCAGT CGAAACACGA GTCCATAATA 
    CGAGCGGTGG TTGCTCACGC GCCATCCAGT TTGGCTGGAG ATGCTATTCT 
    GCATTTCGAC AGTGAAGCTG TTCGGGTTTC AACAAAGGCG CAATGTTAGC 
    TCTTTAGCCA AGCGTTTCAG TCTCGCCGGG AAACTAACGT TAGAGCTCCA 
    AACTCAGGTT TGATTTGTGA AAGATTGAGA CTTTCGTGAA ATTTGTGAAA 
    TCAATGTGAT GGACTGTTCA CAGCTTGATT ATCTCAAGTG TTAGAAAAGT 
    TTTATCATAC CTGAGTGTGG TTCCAAGAAT TTTTCTAAGT TATGTATGTT 
    TCTCCTCTAC TGATAGCAAT TGATACCAAA GATGAAACCT TTATGTTCTT 
    TTAGCTTCA

AT3G55080.1

Model type
Protein coding
Short Description
SET domain-containing protein
Computational Description
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 1136 Blast hits to 1133 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 243; Fungi - 329; Plants - 401; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55080.2

Model type
Protein coding
Short Description
SET domain-containing protein
Computational Description
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR