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GT22405

CSHL Arabidopsis genetrap mutant lines

Original: GT22405

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22405

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30343470 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT22405 - 5-prime edge 
    GTCTAGGATG GTGCTACAAC ATGGACAAAA CCGTTAAGAG GAAGCTAATT 
    AAAACCGAAA CCCTAAGGAA TAAAAACTCA ATTACCATCA TCTGCACTTG 
    TAAAGTTGAG ATAAGGAACT TCGTACTTCA TCTCACTCGA

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR