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GT22456

CSHL Arabidopsis genetrap mutant lines

Original: GT22456

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22456

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17677353 [Map]; Strand: w
      • AT4G37620.1 - [+] show detail - transposable element gene
        Distance: -2764; Region: intergenic
      • AT4G37630.1 - [+] show detail - cyclin d5;1
        Distance: -1926; Region: intergenic
    Flanking Genome Sequence: GT22456 - 5-prime edge 
    TTATACCCTT TTTCTTACAT CTAGTCTTAT AAATATTAAT ACTATAATAG 
    AAAAATTAAT TATCCTATAT ATTGAATGAC TCGGCTCCAA AGCCATGCGC 
    CTATATATAC AAGTCTTTTT ATTTTTTAAA AAATTTGTCA AAAAAGGGAC 
    CAGAAACATA TAAAGATGGG AGCCTCATTT GCTGATGGAT AAATAAATAT 
    TTATTTGATT TTAAGTTTGT TCAAGACTAA TTATAGTACA AATTAGTAAA 
    TTGTTGTTCT TTTTTTTTCT TAACATATTA CATATTGTAT AGTATAATTC 
    CACTTTCATC CAATTGGATA ATCAGTTATA ATTCGGATGG TTTACGATAC 
    ATCGGATTCT GCTTTCAATT TTTCTTGTAT ACATCAAAAC TTAAAAGGGT 
    ACAAAAATCT CCGAACACAT AATAAGGTTT TGGAACCCGC TAACGAGACC 
    TACCTATTTT TACAATAAAT ATACTCATTC AGTATTTGTC TATATTTCTA 
    CCTACAATCT ATGTGAATTT GCTTACGTAT ATCTACTCTT

AT4G37620.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR

AT4G37630.1

Model type
Protein coding
Short Description
cyclin d5;1
Curator Summary
core cell cycle genes
Computational Description
cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D1;1 (TAIR:AT1G70210.1); Has 2916 Blast hits to 2915 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 1359; Fungi - 342; Plants - 911; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
Link
InterPro Scan - TAIR