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GT22470

CSHL Arabidopsis genetrap mutant lines

Original: GT22470

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22470

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224327 [Map]; Strand: w
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: GT22470 - 5-prime edge
    TCCAAACCCA AGCCCCAACA TGGTCCACCT TCTCATTTGG GTAATAACTA 
    ACAATAATAA TCTTCAAACG CTCCTATATA ACATTTACTA CACGTCTCCA
    TCTTCAAACG CTTCTCTTCT ATTATAAGAA CACATCACTT ACCATTCGTG
    GACAAAACAA CAAATAAAAC CTTCATTAAA GTCCTATTTA TTATTCACAC
    ATGGGTTTTT TGTTTCAGTT CTTCAGAGGC ATGAACTCGT AGTAGTAACA
    GTAGTTGCAT GCTTTCGTCT TCTCTATCAA CCGGCCTGTT TTCTCTTGGT
    ACTCCCTAAC CGGAAAGAGA TTTAAAGTCC GGTTGTCCCT CGTTTCTTCT
    T

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR