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GT22517

CSHL Arabidopsis genetrap mutant lines

Original: GT22517

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22517

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6345428 [Map]; Strand: c
      • AT1G18415.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G18420.1 - [+] show detail - Aluminium activated malate transporter family protein
        Distance: 0; Region: exon7 (CDS)
      • AT1G18430.1 - [+] show detail - pre-tRNA
        Distance: -336; Region: promoter
      • AT1G18440.1 - [+] show detail - Peptidyl-tRNA hydrolase family protein
        Distance: -546; Region: promoter
    Flanking Genome Sequence: GT22517 - 5-prime edge 
    GAGATCCGGC TAGCCCACGA CGGCTGTTTA TGTATCATCG TCCTTGATTG 
    CAGGTAAGGA AGCATCGTCG CCGAACTCAA GTTAGCTGCA GTTGTAACAT 
    CATCCCAATT CTTCGGTGGA CGAAGAGTGG CTTCACTCTG AGATTTATGA 
    GCCAAGATCC GACTTAGATC AGAGTCGAGA TTCGAGATTT TTTGTTCATC 
    AGTCAAATCC CTAACCCTAG GCCGGTTCCC GATTTCCCAA TTCTTGGCGT 
    TCACGAAAAG GTATGATTTC TTCTCTCTCG ACC

AT1G18415.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G18420
Link
InterPro Scan - TAIR

AT1G18420.1

Model type
Protein coding
Short Description
Aluminium activated malate transporter family protein
Computational Description
Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 9 (TAIR:AT3G18440.1); Has 539 Blast hits to 535 proteins in 118 species: Archae - 0; Bacteria - 174; Metazoa - 1; Fungi - 11; Plants - 341; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18430.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Asp (anticodon: GTC)
Link
InterPro Scan - TAIR

AT1G18440.1

Model type
Protein coding
Short Description
Peptidyl-tRNA hydrolase family protein
Computational Description
Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0; Bacteria - 5299; Metazoa - 47; Fungi - 102; Plants - 126; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink).
Link
InterPro Scan - TAIR