GT2253

CSHL Arabidopsis genetrap mutant lines

Original: GT2253

Phenotypes

Morphological phenotypes

Original description

  • stunted plants with delayed flowering
Anatomical entity
/structure development stage		 Phenotypes
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: GT2253

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2422442 [Map]; Strand: c
      • AT3G07580.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT3G07580.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT3G07590.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -628; Region: promoter
      • AT3G07590.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -643; Region: promoter
    Flanking Genome Sequence: GT2253 - 3-prime edge 
    CCGTTACCGA GGGTCTTCGT TAGTCCAGGC AAAGAAGACA GAGAGAGAGA 
    GAGAGAGAGA GAGAGCTCAC ATCCCTCCCG ACTTCGGGAG ACTCCCAGAC 
    GCCTTCGTGT GACAGGGAGA CGCCACCTCG AGGTGTGAGA GGGGTGTCGC 
    GATCTCTGTA GAATAGAGAA CTCTCGATCT CCGCAGATCA GAGACCTCTG 
    AAGAAGAAGA AGAAGATGTT CCCTTTGATT GGGAGGAGTG TCTCGACTCT 
    GAGGGGAGCT CGACTCCGCC AGTGAAGAGT TGAGATTTAC GCTGTTTTCT 
    CAGAGAACTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCGGGGGG 
    GAGATATCTG TCCTCTCTTG TGTGTCTCGC ACAGAGAGTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2422450 [Map]; Strand: c
      • AT3G07580.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT3G07580.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT3G07590.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -620; Region: promoter
      • AT3G07590.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -635; Region: promoter
    Flanking Genome Sequence: GT2253 - 3-prime edge 
    GACCGTTTTC ATTAGTCCAG GCAAAGAAGA CAGAGAGAGA GAGAGAGAGA 
    GAGAGAGCTC ACATGTCTCC CGACTTCGGG AGACTCCCAG AAGCCTTCGT 
    GTGACGGGGA GAAGCAACCT CGAGGGGTGA GAAGGGAGTA GCGATCTCTG 
    TAGAATAAAG AACACTCGAT CTCAGCAGAT CAGAGACCTC TGAAGAAGAA 
    GAAAAAGATG TTCCCTTTGA TTGGGAAGAG TGTATCGATT CTGAGTGGAG 
    CTCGAATCCG CCATTGAAGA GTTGGGATTT GCGCAGTTTT TTCAGAGAAC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCGGGG GGGAGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2422342 [Map]; Strand: c
      • AT3G07580.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT3G07580.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT3G07590.2 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -728; Region: promoter
      • AT3G07590.1 - [+] show detail - Small nuclear ribonucleoprotein family protein
        Distance: -743; Region: promoter
    Flanking Genome Sequence: GT2253 - 5-prime edge 
    TTATTGATTC TTAATCAATT CGGTTCTTAA TTCCGAGAGT ATCTAGTTCT 
    GTGGAGATTA TAGCTTAGAT CAAAGATTGT CGATGAGTAG AAGTAATCTT 
    GTTTTGTAGA TTCAGGAATT GATTGCATGC GAATCTGTAC ACATTGTGTT 
    TGTGCATAGT TGGTAACTTC AAGAACCGTT TCTAAGAAAG TGAATTATTA 
    GGGTTTGAGC CTGAAATTCA GATCTCGCTC TCTCTTTATT AGCAAATCCG 
    CTGGTTGATT CATCTCTCTC GA

AT3G07580.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07580.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1).
Link
InterPro Scan - TAIR

AT3G07590.1

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G02840.1); Has 1173 Blast hits to 1172 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 423; Fungi - 342; Plants - 215; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07590.2

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G02840.1).
Link
InterPro Scan - TAIR