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GT22540

CSHL Arabidopsis genetrap mutant lines

Original: GT22540

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22540

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28582896 [Map]; Strand: c
      • AT1G76160.1 - [+] show detail - SKU5 similar 5
        Distance: -1763; Region: intergenic
      • AT1G76170.1 - [+] show detail - 2-thiocytidine tRNA biosynthesis protein, TtcA
        Distance: 1143; Region: intergenic
    Flanking Genome Sequence: GT22540 - 5-prime edge 
    AGATAAAAAG AATATTATTC TTTATTCGAA CAATCGAGGC ATATAATTTA 
    CCTTTTGATG GCCGATTTTT TTGCTTGTGA TTACCTTCGT TACGAAGTTT 
    TATACTATTG AATCTAGGCT GTTTATTGAA TCTAAGTTTT TTTGCTTGTG 
    ATTATCTTCG TTAAGCTTTG TTTCTTCTCT CTCGA

AT1G76160.1

Model type
Protein coding
Short Description
SKU5 similar 5
Computational Description
SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76170.1

Model type
Protein coding
Short Description
2-thiocytidine tRNA biosynthesis protein, TtcA
Computational Description
2-thiocytidine tRNA biosynthesis protein, TtcA; FUNCTIONS IN: ATP binding; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Uncharacterised protein family UPF0021, C-terminal (InterPro:IPR000541), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: repressor of lrx1 (TAIR:AT2G44270.1); Has 4635 Blast hits to 4558 proteins in 1674 species: Archae - 313; Bacteria - 3429; Metazoa - 162; Fungi - 209; Plants - 60; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).
Link
InterPro Scan - TAIR