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GT22573

CSHL Arabidopsis genetrap mutant lines

Original: GT22573

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22573

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3963846 [Map]; Strand: w
      • AT3G12500.1 - [+] show detail - basic chitinase
        Distance: 0; Region: exon1 (CDS)
      • AT3G12502.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: GT22573 - 5-prime edge
    TTGGCAGCCA GGCTGCTTAC AGTATGGTTC GGTGTTACCG CACCAGCCGA 
    ACTCGCTGCA GCATAGACCG TTGGGGCAGA GTGCTCCTCC AGCTTGGCGA
    CCACATTGCT CGGCCGAGGA TAATGATAGG AGAAGTGAAA AGATGAGAAA
    GAGAAAAAGA TTAGTCTTCA TTTTGTTCAA TGTTCTATGG TTTTCTTCTC
    TCTCGA

AT3G12500.1

Model type
Protein coding
Short Description
basic chitinase
Curator Summary
encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.
Computational Description
basic chitinase (HCHIB); FUNCTIONS IN: chitinase activity; INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT4G01700.1); Has 2944 Blast hits to 2653 proteins in 549 species: Archae - 0; Bacteria - 615; Metazoa - 38; Fungi - 228; Plants - 1922; Viruses - 10; Other Eukaryotes - 131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12502.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT3G12500
Link
InterPro Scan - TAIR