1. Home
  2. Mutant Lines
  3. GT22584

GT22584

CSHL Arabidopsis genetrap mutant lines

Original: GT22584

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22584

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21452578 [Map]; Strand: w
      • AT1G58020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    2. Chromosome: 4; Position: 11046098 [Map]; Strand: c
      • AT4G20520.1 - [+] show detail - RNA binding;RNA-directed DNA polymerases
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT22584 - 5-prime edge 
    CATTATCCAT CTTACCCAAA CTTCGGGGAA CCCCGCAGAA ATAAGTGTAT 
    CCTCCAGATA ATCCCATCGG ATCCTATCAT AAGCCTTCTC CAAATCCAAC 
    TTCAAAAGCA TCCAGCCCTT TACCCCTTTT TTTCTTCTCT CTCGACTAGG 
    ATTTCCAGGG GGTAAATCCT TCCTTTCTTA AGTAAAAAAA AGGATTTTAT 
    TGGGCGGGGG GG

AT1G58020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.7e-49 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20520.1

Model type
Protein coding
Short Description
RNA binding;RNA-directed DNA polymerases
Computational Description
RNA binding;RNA-directed DNA polymerases; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477), Protein of unknown function DUF1204 (InterPro:IPR009596), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1204) (TAIR:AT4G20700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR