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GT22608

CSHL Arabidopsis genetrap mutant lines

Original: GT22608

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22608

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19548548 [Map]; Strand: c
      • AT2G47680.1 - [+] show detail - zinc finger (CCCH type) helicase family protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: GT22608 - 5-prime edge 
    CCCATCTATA CTTAAGCTGT CATTGAGACA ACACGTTCTC CATATTTGCT 
    GCACGGAATC CAGAGCCCTT AATGACGCAC ATGGTAATAA TATTATAATT 
    GTGTAAAGAA TGTTTAACTT CTTTTATAAT ACAAGATGTC CAACTTGGGT 
    TACCTGTGAA ATACTACGGA GAGTCGGCTT TGCTAGGTCT TCTGCTACTG 
    CATCACTACC TATCACATGA CTTCCTGTTT GGCGCAAATA CCCATATATG 
    AATCTCACTG CTTAGGGAGG GAGAATTCTT TCATTATTCT TAATAATTGA 
    TTGCATATAA GCTTTATACA TACAATATAT CGAATCTATA ACATAGTGTC 
    CAAAATGTTA TTGTGTCTAT CTAATACGAC TCCGTCAGTT GAACTGAGTG 
    TTATTATATT CTATAACTTA GCATTGCTG

AT2G47680.1

Model type
Protein coding
Short Description
zinc finger (CCCH type) helicase family protein
Computational Description
zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
Link
InterPro Scan - TAIR