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GT22616

CSHL Arabidopsis genetrap mutant lines

Original: GT22616

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22616

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2740543 [Map]; Strand: w
      • AT4G05390.2 - [+] show detail - root FNR 1
        Distance: 0; Region: exon1 (5UTR)
      • AT4G05390.1 - [+] show detail - root FNR 1
        Distance: 0; Region: exon1 (5UTR)
      • AT4G05400.2 - [+] show detail - copper ion binding
        Distance: -617; Region: promoter
      • AT4G05400.1 - [+] show detail - copper ion binding
        Distance: -643; Region: promoter
    Flanking Genome Sequence: GT22616 - 5-prime edge
    TGAGAGAGCC ATAGCAATGG GAGAAAAGAG ACGATAATTC TCCAGATGAA 
    TATTAATAAT TGATCTCACA ATCGAGAGGA AAAAAATGAT TTGAGGAACA
    AAAGAAACAG AGGATGATTC TGGGTTTATA GTAAGAAGGT GAGGGGAAGA
    AGAAGATCCT TTCAAGGCCC AGAAGAGACA ACAACAGAGC AGCCCATACT
    GACTGCAAAT TTCTCAACTT TTTTTTTGGC TCTCGAGAGA TCTTAGTGGA
    CAAATTGCTT TTTGTCTGTG TTGGATCTTC TTTACTTTTC ACCACGTTCT
    TTGTATTTTA CTTGTATTTG GTACTTGGAG GTTACAGTTT CCAAAGCCAA
    ATTCGTTGTT AATAGTGAGA AATTTAACAA GTTGCAAGAG ACTGAATTCA
    GCAAATTTCT TCCCACTTCA GGAAAAGTAA AATCGAATTT GTTTTCAGAA
    AGAACCTTCG GTTATGTGGT GGTAAGCCGA AACAATAACC AAAAATTAAA
    TCGAATTGAA CCAAATCAAT TCAAAATTAA CGTCGGTTCT CATTCGGTAT
    ACAAAGAAAT GGAAAACCGA ACCAAGAAAC CAAATTGGAG TTTTCTAAAA
    GACAAAAAAA CCCTCGGTTT AAGCTGAATT TACAGTTTTG TGACATCGTG
    ATTTATTAAA CGACGTCGTT GTACCTTGAT GTAAAACGAC TTCGTTGGTT
    CAGTGTTCTT C

AT4G05390.1

Model type
Protein coding
Short Description
root FNR 1
Curator Summary
Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
Computational Description
root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05390.2

Model type
Protein coding
Short Description
root FNR 1
Curator Summary
Encodes a root-type ferredoxin:NADP(H) oxidoreductase.
Computational Description
root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.1).
Link
InterPro Scan - TAIR

AT4G05400.1

Model type
Protein coding
Short Description
copper ion binding
Computational Description
copper ion binding; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 54 Blast hits to 54 proteins in 22 species: Archae - 8; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05400.2

Model type
Protein coding
Short Description
copper ion binding
Computational Description
copper ion binding; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR