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GT22683

CSHL Arabidopsis genetrap mutant lines

Original: GT22683

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22683

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1957995 [Map]; Strand: w
      • AT3G06430.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G06433.1 - [+] show detail - pseudogene, expressed protein
        Distance: -906; Region: promoter
    Flanking Genome Sequence: GT22683 - 5-prime edge 
    TGTACCGCTG GCTTTTTGGC GATGAGATCG GACAAAGTTT CAGTGACGGT 
    GTTAACCCAT CCGTTAGCTT TGCTTCTCCT GTCAAGTTTC TTCTTCACAT 
    TCTTTATCGG AGTTCTTCTC TCTCGA

AT3G06430.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
embryo defective 2750 (EMB2750); INVOLVED IN: pollen tube development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 31867 Blast hits to 12007 proteins in 283 species: Archae - 3; Bacteria - 31; Metazoa - 288; Fungi - 376; Plants - 30037; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06433.1

Model type
Pseudogene
Curator Summary
pseudogene of nodulin MtN3 family protein
Computational Description
pseudogene, expressed protein
Link
InterPro Scan - TAIR