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GT22693

CSHL Arabidopsis genetrap mutant lines

Original: GT22693

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22693

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 287735 [Map]; Strand: c
      • AT3G01800.1 - [+] show detail - Ribosome recycling factor
        Distance: 0; Region: exon8 (3UTR)
      • AT3G01810.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -803; Region: promoter
      • AT3G01810.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -834; Region: promoter
      • AT3G01810.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -838; Region: promoter
    Flanking Genome Sequence: GT22693 - 5-prime edge 
    ACTTCTCCTC AACTACACAA AGCCAATTAT TACTAGTACT ACTATATATA 
    TGAAACTCGA ATAAATAACA TCATACTTAT TGGAATTCTT TTAAGGCCTT 
    TCTTGGGCCC TTTGAAGGGC CTTCCGTCGC TATTCATCAT CAATTTTCTT 
    GCAGTTCCAA GATCCCCAAA TCAAACATTC AAAAGTTGAA AACAAATCTT 
    GGCAATGAAT AAAAGATTCT TTCAAGGTAG CGTGAAAAGA CTAGTGATGT 
    ATAGAAATGA TGAATCACGC TTCGGTGATC TCTTTCTCTT TGGACTTGCA 
    CATGTCCTCT GCTGACTTCA CAAATTTCTT CGTCAACTCA TCTACCTGTT 
    CACACAAAGG CCATTATTTT CAGTAACTGA GGTAGGATGC ATATTTGCAG 
    AAAGATCATA CAATGACACT CACTTCCTTC TCCAGTCTTT TTACTTCATC 
    CTTTGGTAGA ATCGAGCCTG CTTTCTTTAA TGGGTCCAGT GCCTGACCGA 
    AAAAAATGTC TCTGAT

AT3G01800.1

Model type
Protein coding
Short Description
Ribosome recycling factor
Computational Description
Ribosome recycling factor; INVOLVED IN: translational termination, translation; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: ribosome recycling factor, chloroplast precursor (TAIR:AT3G63190.1); Has 7776 Blast hits to 7776 proteins in 2635 species: Archae - 0; Bacteria - 5288; Metazoa - 113; Fungi - 65; Plants - 94; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2).
Link
InterPro Scan - TAIR