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GT22696

CSHL Arabidopsis genetrap mutant lines

Original: GT22696

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22696

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84803 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: intron1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -598; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -613; Region: promoter
    Flanking Genome Sequence: GT22696 - 5-prime edge 
    CCCCCGGCGT TGGCTCTGCT GTAGAAGACA GACCACCAGG TATTTATTAT 
    TAGGAGAAAC TCCACTTTCT TGATTGATTT TTATTATCAT CTCCACACTG 
    CTTTGGGTTG TTGATATAGT TAGTTAGTTA GTTAGTGATG AATTACACAC 
    TGCTGCTGTG GCAGATTCAT CTGAAGATAG ATCAAGTTCG GTCTATGAGT 
    TTCTGTATCC CCGTAAAGAG GAGCTCCCTG ATGACAAAGA AATGACTATT 
    TTCGACCATC TCGAGGAGCT CCGGGAGAGA ATATTCATCT CTCTCGACTA 
    TGTAGGAGCT GCAATCTTGG GATGCTTCGC CTTCTCCAAA GATCTTATTG 
    TCTTTCTTGA AGCTCCCGTC AAAACTCAGG GTGTACGGTT TCTCCAGCTT 
    GCTCCTGGCG AATTTTTCTT CACAACTTTA AAGGTAATGA TCAGATTGAC 
    GACAGATAGC ATCATATTCA AGATAGATGA TTTTCTTTTT CTTGTGTTGC 
    GGTGCAGGTC TCCGGTTATT GCGGGCTTCT ACTAGGGAGC CCAGTGATCC 
    TGTATGAGAT TATAGCTTTT GTCCTTCCCG GTCTGACACG GGCTGAGAGA 
    AGGTTTCTGG GGCCAATTGT ATTTGGCTCC TCATTGCTCT TCTATGCTGG 
    ACTTGCTTTC TCCTACTGGG TTTTAACCCC TGCAGCCTTG AATTTCTTTG 
    TGAATTACGC TGAAGGTGTG GTAGAATCTC TGTGGTCTAT CGACCAGTAC 
    TTTGAGTTTG TACTAGTGCT TATGTTCAGC ACAGGCCTTT CTTTCCAGGT 
    ATGTGGCAAT ATGATATTAT ACATGTTCCT AAACGTT

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR