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GT22698

CSHL Arabidopsis genetrap mutant lines

Original: GT22698

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22698

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 623534 [Map]; Strand: c
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 589; Region: intergenic
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: 1558; Region: intergenic
    Flanking Genome Sequence: GT22698 - 5-prime edge 
    TTTGTTTATA TTGTTCTTGT ATTACAGAAT TTAAACATAT TGATCGGATT 
    TGTTTTGCTT ATGATGTTTA GATTTTTCCC GATTTTTTAA TAAGCTTTGA 
    ATACAAAAGT TAAATATATG CGGAAACCGA TATATGAATT AAAATTTCGA 
    AAAAAGTAAT GTGAGTGAGA TAGGCTGAGT TTTACGTATT ACAAGCGAGA 
    CCGATGTGTC AATGAGACTC TGACCATAGG CTTCCTTTTA CGATGCTTTT 
    TTACCATTGG AATATTAAAA AAATTCTGCC ACCTTTCTCT TCGTTGTTAA 
    AAGTAAAACT AGAGTCATTA TACAATAAAC AAGTATTTTT AGTCAGTAGA 
    CGTTGATGCA AAAGAATACC TTTAAATTTA TGTTGTAGCT GTACCTTTTT 
    TATCAAGCGT AGATTTGTCA GACGTATGGA CGATATGAGA GTATTAATAA 
    AACGTATATG CAAAATATAA AAAGAGGTTG CGGAGTGTGA AGGCGACTTC 
    TTCTTAGTAA TAATGATGTT TCATCTTTAA TTGTATTTGT TTCCATTTCC 
    GTAACCATTC TAATACGGAC GTCTAAAGTC AATTTCTTAA CATTATTACT 
    AAGTGGGAAA CATTTATAAA TGGAAGTAAA TATTACTCAT GGTTAACTTT 
    TTTCGTTTTC GGGGTCAAAC TGAACTCATA GGTTAGTTTA TATTCAAAAA 
    TTACAGGCAA TAATAACCTA AACCTTCATG TGACCAAT

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01470.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 1;3
Curator Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational Description
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR