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Mutant Lines
GT22704

GT22704

CSHL Arabidopsis genetrap mutant lines

Original: GT22704

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22704

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 2994773 [Map]; Strand: w
- AT5G09660.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon3 (CDS)
- AT5G09660.2 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon2 (CDS)
- AT5G09660.3 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon2 (CDS)
- AT5G09660.4 - [+] show detail - peroxisomal NAD-malate dehydrogenase 2
  Distance: 0; Region: exon3 (CDS)

TTTGCTACAC CTTCACATAG TGTTTTAACA ATCCCAGCAT TGATTTTAAA 
CAGATCATCG CGGGTCATCC CTGGTTTCCT CGGTATACCG GCTGGTATGA 
TCACAAGATC CATACCCGTT AGCGCGTCCT CAAGCTGCTT CGCTCCCAAG 
AACCCGCGGA CCTAATCAAT CAAGAGTGGT CATTACTCAT TCATTAGCAA 
GAAGAAGTAA TCTTATGTGA AGTTTTCAAA GTTTAAGAGA GATACTTACA 
ACAGCTCCAG TGTCCATATG ACTGACGTCA GCAGTGACGC CAGGAGCATT 
GACAACATCG TAGAGATGTA GTAAAGAGAC AAGAGGGTTC ATCTTCATCA 
GCAAAGATAA AGATTGTCCA ATTCCACCTG CAGCTCCAAG AATTGCTACT 
TTGAATCCTG GATTACCACC TTTAGCTCTG CAGTTTTCCC GTCCGATTAC 
AGAGTTCTTG GCCTCCATCT AATGGTTGAT CAATCATGAA TAAGAAGAAG 
AAATTTCACT ATCAGTCCTA GATGACTTCA ACGGAGTCAT AAACAGATTG 
GTCTCTCTAA TGGCATCAGA AATCTTCAG

AT5G09660.1

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17070 Blast hits to 17068 proteins in 5416 species: Archae - 235; Bacteria - 12016; Metazoa - 1211; Fungi - 533; Plants - 741; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.2

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, vacuole, microbody; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17207 Blast hits to 17205 proteins in 5456 species: Archae - 235; Bacteria - 12094; Metazoa - 1213; Fungi - 536; Plants - 740; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.3

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 16823 Blast hits to 16821 proteins in 5415 species: Archae - 235; Bacteria - 11979; Metazoa - 1199; Fungi - 507; Plants - 555; Viruses - 0; Other Eukaryotes - 2348 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G09660.4

Model type: Protein coding
Short Description: peroxisomal NAD-malate dehydrogenase 2
Curator Summary: encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description: peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: apoplast, chloroplast, peroxisome, microbody; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR