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GT22721

CSHL Arabidopsis genetrap mutant lines

Original: GT22721

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22721

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18570773 [Map]; Strand: c
      • AT4G40050.1 - [+] show detail - Protein of unknown function (DUF3550/UPF0682)
        Distance: -6935; Region: intergenic
      • AT4G40060.1 - [+] show detail - homeobox protein 16
        Distance: 586; Region: intergenic
    Flanking Genome Sequence: GT22721 - 5-prime edge 
    AGGAGTAGAG GGAGTGAAAT ACAAAATGGG AGGAAAGAAA GACGCAGCTT 
    TTTCCCCCGG ACCTGTAACA TCTAATCCCA CGACACGACA TCTCTTTCTT 
    TTTTGGTAAA TTTGTGAAGA CCAAATTCAT TAGTGAAAAA GACATTGAAC 
    TAGTGATCAC GACAAAACCC AAATCCATCT TTATTATTTA GTTGATTGTA 
    TTGGATCGAA TATTAATGTT ACTATCAACA TAAAAATTAC GAAAGGAAAA 
    AAAAAAAAAA AAATCCCTTT TGGGAAAATA TTGAAAAAAT TAATTTCATC 
    CAACTTTTAA AAAATGGGGG AAATTTTTTG GATTTCCGGA AAAGGGTTTT 
    TGACCTTTAC TAAAAATTTA ACTTTTGGGG AAAAAAAAAA AAAATAATTC 
    CCAAAAAAAA AGGGGAAAAA ATTGGAATAA AAAAAAAAGA ATGGGTTGGG 
    GAAAAATGGT TTCCTCCTCA ATCCTCCAGG GACTTACTTT TGTTACCCTG 
    AATGGGGGGA CGGGTTTCCA GGGAAACATG GGAAATCCTT TTTAAGGAAA 
    GAAGAAAAAA TTTTGGCCAA AACTTTTACC CTTTGCCCGG AA

AT4G40050.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3550/UPF0682)
Computational Description
FUNCTIONS IN: signal transducer activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP013022 (InterPro:IPR016607), Regulator of G protein signalling (InterPro:IPR000342); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3550/UPF0682) (TAIR:AT3G03570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G40060.1

Model type
Protein coding
Short Description
homeobox protein 16
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 16 (HB16); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 6 (TAIR:AT2G22430.1); Has 9713 Blast hits to 9689 proteins in 534 species: Archae - 2; Bacteria - 4; Metazoa - 7673; Fungi - 210; Plants - 1646; Viruses - 5; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR