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GT22732

CSHL Arabidopsis genetrap mutant lines

Original: GT22732

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22732

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 184743 [Map]; Strand: w
      • AT3G01470.1 - [+] show detail - homeobox 1
        Distance: -340; Region: promoter
      • AT3G01472.1 - [+] show detail - conserved peptide upstream open reading frame 33
        Distance: -340; Region: promoter
    Flanking Genome Sequence: GT22732 - 5-prime edge 
    GTACTACTTA AAAACTAACA AAAGTTTTTC AACGAAATCT TGAAAAGGGG 
    CAATTGTGGT AAATCGAAAG TGATTGGCTT GTTTACAAAT CGGAAGTGGA 
    CTTTTCTGAG CTCTCTGGGG TCCACTTTCT TTAGCGAGTG GACTTGGAAA 
    CAGATCTCAT CCGTTGGATT TGAATTATAC CTTTTCTCTA AAGTTATTTA 
    TTATTATTAA AAAAAATAGT TTTATTCAGC TGTGGTGGTT CGGCCAGAGT 
    GTGTTAAATA GGGTTGCATA CTCGACGGTC GGGTCAGTGT CGGATCTACG 
    CTTGATCCTC ATTCATCTAA CGGTCCTCCT CATCCTGTTA CTTCCTATTT 
    TGCACAGCCC TGTCACTGTA TCACCATGTC ATTAAAAAAT TCATTAAAAT 
    CAAATTCACG TCATTCCTAT CTTTTAGTAT TTGTTTCTTA TTTTAATGCA 
    CCTTGACGTC TTTGCACACA ATATTAATTT CAAATTATAC GTATTGCGTG 
    ACTGTTACAG CAAAATTACT CTTTAAAAAT CACATTTATA TGGTTAGTAA 
    CTTTGTTTTA CTATTGCTAT TTATGAAAAA AAAATATACT AGTATACAAC 
    CAAAATTTGG TGAATATCGA TTTCATGTCA CCTTACGGAG AAAAAGAAAA 
    CAGACCAGGT GCATGGAATT GCTTATCGCC GCACTAATTT AGTTATATTA 
    ACTTATCATG TTGTTTACAC AAGTCCCCAC GTAGCTTCGT CCTGTCTTTT 
    TTTTTTGTTT T

AT3G01470.1

Model type
Protein coding
Short Description
homeobox 1
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.
Computational Description
homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress, response to blue light, positive regulation of transcription, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969; Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes - 244 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01472.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 33
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF33 represents a conserved upstream opening reading frame relative to major ORF AT3G01470.1
Computational Description
conserved peptide upstream open reading frame 33 (CPuORF33); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR